Gene eQTL query


Step1: select a dataset

CMC             Fetal brain             PsychENCODE            

Step2: input genes

or - Input SNPs

Step2: input SNPs

RP11-723O4.9
BTN3A2

or - Input SNPs

rs2298213
rs1979
rs6542124
rs10476207

Where does this data come from?

We collected gene expression quantitative trait loci (eQTL) data from the following studies:

  1. CMC eQTL (http://www.synapse.org/CMC ): Fromer et al. 2016. Gene expression elucidates functional impact of polygenic risk for schizophrenia. Nature Neuroscience, 19(11):1442-1453. [PMID: 27668389)].
  2. Fetal brain eQTL: O’Brien et al. 2018. Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders. Genome Biology, 19(1):194. [PMID:30419947].
  3. PsychENCODE eQTL(http://resource.psychencode.org/ ): Gandal et al. 2018. Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder. Science, 362(6420):eaat8127.[PMID:30545856].
If you used this data, please cite the reletive reference.